:py:mod:`biotaphy.common.sequence`
==================================

.. py:module:: biotaphy.common.sequence

.. autoapi-nested-parse::

   Module containing sequence class.



Module Contents
---------------

Classes
~~~~~~~

.. autoapisummary::

   biotaphy.common.sequence.Sequence




.. py:class:: Sequence(name='', seq='')

   Constructor for Sequence.

   :param name: A name for this sequence.
   :type name: str
   :param seq: A sequence string.
   :type seq: str

   .. py:method:: get_fasta(self)

      Get a fasta string.

      :returns: str - A fasta string for the sequence.


   .. py:method:: get_fastq(self)

      Get a fastq string.

      :returns: str - A fastq string for the sequence.


   .. py:method:: set_cont_values(self, values)

      Set the continuous values for the sequence.

      :param values: A list of values.
      :type values: list


   .. py:method:: set_qualarr(self, qual)

      Set the qualarr attribute.

      :param qual: A list of code point integers.
      :type qual: :obj:`list` of :obj:`int`

      .. note:: * An offset of 33 is assumed.

      .. todo:: * Should this reset both or neither?


   .. py:method:: set_qualstr(self, qual)

      Set the qualstr attribute.

      :param qual: A new string to use for qualstr.
      :type qual: str

      .. note:: * An offset of 33 is assumed.

      .. todo:: * Should this reset both or neither?