.. BioaPhy Python documentation master file, created by
   sphinx-quickstart on Wed Feb 20 17:46:26 2019.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to BiotaPhy Python Library documentation!
=================================================

The BiotaPhy Python repository contains various bio- and phylo- diversity
metrics for provided data.  These computations utilize Lifemapper objects so
that they can then be deployed in high-throughput environments such as a
`Rocks Cluster <http://www.rocksclusters.org/>`_ or even an
`XSEDE <https://www.xsede.org/>`_ resource such as
`Comet <https://portal.xsede.org/sdsc-comet>`_.  At this time, analyses are
limited to those that can be calculated using Presence Absence Matrices (PAMs)
and Phylogenetic trees.

.. toctree::
   :maxdepth: 1
   :caption: Contents:

   pages/installation
   analyses/analyses
   pages/data_formats
   pages/references
   pages/contributing
   pages/about



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`