biotaphy package

Subpackages

• biotaphy.analyses package
  • Subpackages
    • biotaphy.analyses.ancestral_state package
      • Submodules
      • biotaphy.analyses.ancestral_state.anc_dp module
      • Module contents
    • biotaphy.analyses.helpers package
      • Submodules
      • biotaphy.analyses.helpers.data_readers module
      • biotaphy.analyses.helpers.permutation_testing module
      • biotaphy.analyses.helpers.sequence module
      • Module contents
    • biotaphy.analyses.phylo_beta_diversity package
      • Submodules
      • biotaphy.analyses.phylo_beta_diversity.phylo_beta_diversity module
      • Module contents
        • calculate_phylo_beta_diversity_jaccard
        • calculate_phylo_beta_diversity_sorensen
        • core_Beta_calc
        • core_PD_calc
        • pdnew
    • biotaphy.analyses.tools package
      • Submodules
      • biotaphy.analyses.tools.annotators module
      • biotaphy.analyses.tools.plots module
      • Module contents
  • Module contents
• biotaphy.client package
  • Subpackages
    • biotaphy.client.ot_service_wrapper package
      • Submodules
      • biotaphy.client.ot_service_wrapper.open_tree module
      • Module contents
        • LABEL_FORMAT
          • ID
          • NAME
          • NAME_AND_ID
        • induced_subtree
        • resolve_names_otol
        • sanitize_name
  • Module contents

Module contents

Biotaphy base module __init__.