Index

A

AlignmentIOError analyses.helpers (module)

analyses.helpers.data_readers (module) analyses.helpers.sequence (module)

C

cont_values (analyses.helpers.sequence.Sequence attribute)

create_sequence_list_from_dict() (in module analyses.helpers.data_readers)

G

get_character_matrix_from_sequences_list() (in module analyses.helpers.data_readers)

get_fasta() (analyses.helpers.sequence.Sequence method) get_fastq() (analyses.helpers.sequence.Sequence method)

L

load_alignment_from_filename() (in module analyses.helpers.data_readers)

N

name (analyses.helpers.sequence.Sequence attribute)

Q

qualarr (analyses.helpers.sequence.Sequence attribute)

qualstr (analyses.helpers.sequence.Sequence attribute)

R

read_csv_alignment_flo() (in module analyses.helpers.data_readers) read_json_alignment_flo() (in module analyses.helpers.data_readers)

read_phylip_alignment_flo() (in module analyses.helpers.data_readers) read_table_alignment_flo() (in module analyses.helpers.data_readers)

S

seq (analyses.helpers.sequence.Sequence attribute) Sequence (class in analyses.helpers.sequence)

set_cont_values() (analyses.helpers.sequence.Sequence method) set_qualarr() (analyses.helpers.sequence.Sequence method) set_qualstr() (analyses.helpers.sequence.Sequence method)