NeXML

Description

NeXML 1 2 is an XML-based data format used for representing phylogenetic data.

Example

<?xml version="1.0" encoding="ISO-8859-1"?>
<nex:nexml
    version="0.9"
    xsi:schemaLocation="http://www.nexml.org/2009 ../xsd/nexml.xsd"
    xmlns="http://www.nexml.org/2009"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:xml="http://www.w3.org/XML/1998/namespace"
    xmlns:nex="http://www.nexml.org/2009"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
>
    <otus id="d0">
        <otu id="d1" label="A" />
        <otu id="d2" label="B" />
        <otu id="d3" label="C" />
    </otus>
    <trees id="d4" otus="d0">
        <tree id="d5" xsi:type="nex:FloatTree">
            <node id="d6" />
            <node id="d7" otu="d1" />
            <node id="d8" />
            <node id="d9" otu="d2" />
            <node id="d10" otu="d3" />
            <rootedge id="d11" target="d6" />
            <edge id="d12" source="d6" target="d7" />
            <edge id="d13" source="d6" target="d8" />
            <edge id="d14" source="d8" target="d9" />
            <edge id="d15" source="d8" target="d10" />
        </tree>
    </trees>
</nex:nexml>

Footnotes

1

http://www.nexml.org/

2

Rutger A. Vos, James P. Balhoff, Jason A. Caravas, Mark T. Holder, Hilmar Lapp, Wayne P. Maddison, Peter E. Midford, Anurag Priyam, Jeet Sukumaran, Xuhua Xia, Arlin Stoltzfus; NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata, Systematic Biology, Volume 61, Issue 4, 1 July 2012, Pages 675–689, https://doi.org/10.1093/sysbio/sys025